Jieun Jeong is a Ph.D candidate in the Department of Computer Science and Engineering, Pennsylvania State University. Jieun Jeong received her B.A. in Computer Science from the University of Texas at Austin.
Research Interests
    * Application of computer science and mathematics to the problems in biology.
    * Computational Systems Biology, Protein Structure Prediction, Algorithm Design, and Probabilistic Analysis.
Publications
      Journal Articles
    * Low cost search in scale-free networks [pdf] [preprint]
      Jieun Jeong and Piotr Berman
      Physical Review E ,75:036104 (2007)
    * Consistent sets of secondary structures in proteins [pdf] [preprint]
      Piotr Berman and Jieun Jeong
      Algorithmica, To appear (published online first, 10 November 2007)
    * On cycles in the transcription network of Saccharomyces cerevisiae
      Jieun Jeong and Piotr Berman
    * Fold classification based on secondary structure — how much is gained by including loop topology? [pdf]
      Jieun Jeong, Piotr Berman, Teresa Przytycka.
      BMC Structural Biology, 6:3 (2006)
      Refereed Conference Proceedings
    * Packing to angles and sectors [pdf]
      Piotr Berman, Jieun Jeong, Shiva Kasiviswanathan, Bhuvan Urgaonkar.
      Proceedings of ACM Symposium on Parallel Algorithms and Architectures (SPAA), 171-180 (2007)
      (A preliminary version appeared as ECCC technical report. ECCC TR06-030)
    * Bringing folding pathways into strand pairing prediction [pdf]
      Jieun Jeong, Piotr Berman, Teresa Przytycka.
      The Workshop on Algorithms in Bioinformatics (WABI), 38-48 (2007)
      Papers in review
    * On cycles in the transcription network of Saccharomyces cerevisiae
      Jieun Jeong and Piotr Berman
Talks/ Poster presentations
    * Cycles in the transcription network of S. cerevisiae [abstract]
      Jieun Jeong and Piotr Berman
      Poster at RECOMB Regulatory Genomics 2007, MIT/Broad, Oct 11-13, 2007.
    * Consistent sets of secondary structures in proteins [abstract][slides in pdf][manuscript in pdf]
      Piotr Berman and Jieun Jeong
      DIMACS Workshop on Information Processing by Protein Structure in Molecular Recognition, Rutgers University, June 13-14, 2005.
      Poster at RECOMB 2006, Venice Lido, April 2-5, 2006.
    * Predicting protein structure from its approximation
      Jieun Jeong, Piotr Berman and Teresa Pryzycka
      CCGB Seminar, Penn State University, June 29, 2005.
Teaching Experience
    * Spring 2006 - Teaching Assitant for Jonathan Goldtine’s undergrauate course: "Data Structures and Algorithms"
    * Fall 2005 - Teaching Assistant for Martin Furer’s graduate course: "Algorithm Design and Analysis"
    * Fall 2005 - Teaching Assistant for Martin Furer’s undergraduate course: "Theory of Automata, Language and Computability"
    * Spring 2005 - Teaching Assistant for Piotr Berman’s graduate course: "Theory of Graphs and Networks"
Department of Computer Science and Engineering
The Pennsylvania State University
Office: 346D IST Building
Phone: +1(814) 404-0830
E-mail: jijeong@cse (dot) psu (dot) edu

Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong
Jieun Jeong